BIO Pype

A lightweight python framework to organize bioinformatics scripts and analyses.

• Getting Started
  • About
  • Getting Started
  • Configuration
  • Workflow Registry
• Core Components
  • Snippets
  • Pipelines
  • Quick Start
  • Concepts
  • Complete Example
  • Command-line Options
  • Comparison with pype pipelines
  • Advanced Features
  • Troubleshooting
  • See Also
  • Profiles
  • Queue Systems
  • Workflow Registry
• Detailed Guides
  • Composite Arguments and Snippet Results Pattern
  • Batch List Arguments and Dynamic Batch Expansion
• Advanced Features
  • Validation and Editor Integration
  • Progress Tracking
  • Pipeline Resume
  • Pipeline Builder
• Reference & API
  • Understanding Bio_pype Logs
  • API Documentation

Indexes and tables

• Index

• Module Index

• Search Page