BIO Pype
========

A lightweight Python framework to organize, standardize and execute
bioinformatics scripts and analyses.

The documentation is split into two parts:

:ref:`user_guide`
    Install and configure Bio_pype, pull workflows from the registry, run them,
    and monitor execution — including energy and carbon tracking.

:ref:`developer_guide`
    Write your own snippets, pipelines and profiles, wire data between steps,
    and work with the validation, storage and queue internals.

.. toctree::
   :hidden:

   user_guide
   developer_guide

Indexes and tables
------------------

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`