.. _user_guide:

User Guide
==========

Everything you need to install Bio_pype, configure it for your system, pull
workflows from the registry, and run them — without writing any pipeline code
yourself.

If you instead want to *author* snippets, pipelines and profiles, see the
:ref:`developer_guide`.

.. toctree::
   :maxdepth: 2
   :caption: Getting started

   about
   install
   configure

.. toctree::
   :maxdepth: 2
   :caption: Running workflows

   registry
   run
   profiles
   queues

.. toctree::
   :maxdepth: 2
   :caption: Monitoring & sustainability

   progress
   resume
   logs
   carbon_tracking