Installation from git:


It is strongly advised to use virtualenv to install the module locally.

git clone
cd bio_pype
python test
python install

Using virtualenv:

This code guide thought the installation and use of virtualenv when the main python installation does not include the virtualenv module.

mkdir ~/venv_files
# Download virtualenv files (not installed in the python version
# used in computerome)
curl -L -o ~/venv_files/setuptools-20.2.2-py2.py3-none-any.whl \
curl -L -o ~/venv_files/pip-8.1.0-py2.py3-none-any.whl \
curl -L -o ~/venv_files/ \

# Create a virtual environment
python ~/venv_files/ --extra-search-dir=~/venv_files \
# Activate the environment
source ~/venv_bio_pype/bin/activate

# Install bio_pype as instructed above from git

# The pype command line utility will be available upon the "activation"
# of the environment or by specifying the full path, in this case:

# ~/venv_bio_pype/bin/pype

# To deactivate the virtual env: